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1.
Structure ; 30(2): 278-288.e3, 2022 02 03.
Artigo em Inglês | MEDLINE | ID: mdl-34678159

RESUMO

Peroxiredoxins are ubiquitous enzymes that detoxify peroxides and regulate redox signaling. During catalysis, a "peroxidatic" cysteine (CP) in the conserved active site reduces peroxide while being oxidized to a CP-sulfenate, prompting a local unfolding event that enables formation of a disulfide with a second, "resolving" cysteine. Here, we use nuclear magnetic resonance spectroscopy to probe the dynamics of the CP-thiolate and disulfide forms of Xanthomonas campestris peroxiredoxin Q. Chemical exchange saturation transfer behavior of the resting enzyme reveals 26 residues in and around the active site exchanging at a rate of 72 s-1 with a locally unfolded, high-energy (2.5% of the population) state. This unequivocally establishes that a catalytically relevant local unfolding equilibrium exists in the enzyme's CP-thiolate form. Also, faster motions imply an active site instability that could promote local unfolding and, based on other work, be exacerbated by CP-sulfenate formation so as to direct the enzyme along a functional catalytic trajectory.


Assuntos
Peroxirredoxinas/química , Peroxirredoxinas/genética , Xanthomonas campestris/enzimologia , Motivos de Aminoácidos , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Catálise , Domínio Catalítico , Cristalografia por Raios X , Ligação de Hidrogênio , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Dobramento de Proteína , Xanthomonas campestris/química
2.
Microbiol Spectr ; 9(3): e0205721, 2021 12 22.
Artigo em Inglês | MEDLINE | ID: mdl-34935430

RESUMO

The alarmone ppGpp plays an important role in the survival of bacteria by triggering the stringent response when exposed to environmental stress. Although Xanthomonas campestris pv. campestris (Xcc), which causes black rot disease in crucifers, is a representative species of Gram-negative phytopathogenic bacteria, relatively little is known regarding the factors influencing the stringent response in this species. However, previous studies in other Gram-negative bacteria have indicated that RelA and SpoT play a critical role in ppGpp synthesis. The current study found that these proteins also had an important role in Xcc, with a ΔrelAΔspoT double mutant being unable to produce ppGpp, resulting in changes to phenotype including reduced production of exopolysaccharides (EPS), exoenzymes, and biofilm, as well the loss of swarming motility and pathogenicity. The ppGpp-deficient mutant also exhibited greater sensitivity to environment stress, being almost incapable of growth on modified minimal medium (mMM) and having a much greater propensity to enter the viable but nonculturable (VBNC) state in response to oligotrophic conditions (0.85% NaCl). These findings much advance our understanding of the role of ppGpp in the biology of Xcc and could have important implications for more effective management of this important pathogen. IMPORTANCE Xanthomonas campestris pv. campestris (Xcc) is a typical seedborne phytopathogenic bacterium that causes large economic losses worldwide, and this is the first original research article to investigate the role of ppGpp in this important species. Here, we revealed the function of RelA and SpoT in ppGpp production, physiology, pathogenicity, and stress resistance in Xcc. Most intriguingly, we found that ppGpp levels and downstream ppGpp-dependent phenotypes were mediated predominantly by SpoT, with RelA having only a supplementary role. Taken together, the results of the current study provide new insight into the role of ppGpp in the biology of Xcc, which could also have important implications for the role of ppGpp in the survival and pathogenicity of other pathogenic bacteria.


Assuntos
Proteínas de Bactérias/metabolismo , GTP Pirofosfoquinase/metabolismo , Guanosina Tetrafosfato/biossíntese , Doenças das Plantas/microbiologia , Pirofosfatases/metabolismo , Xanthomonas campestris/crescimento & desenvolvimento , Xanthomonas campestris/patogenicidade , Proteínas de Bactérias/genética , GTP Pirofosfoquinase/genética , Pirofosfatases/genética , Raphanus/microbiologia , Virulência , Xanthomonas campestris/enzimologia , Xanthomonas campestris/genética
3.
J Inorg Biochem ; 225: 111604, 2021 12.
Artigo em Inglês | MEDLINE | ID: mdl-34571402

RESUMO

The kynurenine pathway is the major route of tryptophan metabolism. The first step of this pathway is catalysed by one of two heme-dependent dioxygenase enzymes - tryptophan 2,3-dioxygenase (TDO) and indoleamine 2,3-dioxygenase (IDO) - leading initially to the formation of N-formylkynurenine (NFK). In this paper, we present a crystal structure of a bacterial TDO from X. campestris in complex with l-kynurenine, the hydrolysed product of NFK. l-kynurenine is bound at the active site in a similar location to the substrate (l-Trp). Hydrogen bonding interactions with Arg117 and the heme 7-propionate anchor the l-kynurenine molecule into the pocket. A mechanism for the hydrolysis of NFK in the active site is presented.


Assuntos
Cinurenina/metabolismo , Triptofano Oxigenase/metabolismo , Ligação de Hidrogênio , Ferro/química , Cinurenina/química , Oxirredução , Ligação Proteica , Estereoisomerismo , Triptofano/química , Triptofano Oxigenase/química , Xanthomonas campestris/enzimologia
4.
Int J Mol Sci ; 22(18)2021 Sep 13.
Artigo em Inglês | MEDLINE | ID: mdl-34576026

RESUMO

Quorum sensing (QS) is a microbial cell-cell communication mechanism and plays an important role in bacterial infections. QS-mediated bacterial infections can be blocked through quorum quenching (QQ), which hampers signal accumulation, recognition, and communication. The pathogenicity of numerous bacteria, including Xanthomonas campestris pv. campestris (Xcc), is regulated by diffusible signal factor (DSF), a well-known fatty acid signaling molecule of QS. Cupriavidus pinatubonensis HN-2 could substantially attenuate the infection of XCC through QQ by degrading DSF. The QQ mechanism in strain HN-2, on the other hand, is yet to be known. To understand the molecular mechanism of QQ in strain HN-2, we used whole-genome sequencing and comparative genomics studies. We discovered that the fadT gene encodes acyl-CoA dehydrogenase as a novel QQ enzyme. The results of site-directed mutagenesis demonstrated the requirement of fadT gene for DSF degradation in strain HN-2. Purified FadT exhibited high enzymatic activity and outstanding stability over a broad pH and temperature range with maximal activity at pH 7.0 and 35 °C. No cofactors were required for FadT enzyme activity. The enzyme showed a strong ability to degrade DSF. Furthermore, the expression of fadT in Xcc results in a significant reduction in the pathogenicity in host plants, such as Chinese cabbage, radish, and pakchoi. Taken together, our results identified a novel DSF-degrading enzyme, FadT, in C. pinatubonensis HN-2, which suggests its potential use in the biological control of DSF-mediated pathogens.


Assuntos
Acil-CoA Desidrogenase/genética , Infecções Bacterianas/genética , Ácidos Graxos/genética , Doenças das Plantas/genética , Xanthomonas campestris/genética , Acil-CoA Desidrogenase/química , Acil-CoA Desidrogenase/isolamento & purificação , Infecções Bacterianas/microbiologia , Brassica/crescimento & desenvolvimento , Brassica/microbiologia , Comunicação Celular/genética , Ácidos Graxos/metabolismo , Regulação Enzimológica da Expressão Gênica , Genoma Bacteriano/genética , Genômica , Mutagênese Sítio-Dirigida , Doenças das Plantas/microbiologia , Percepção de Quorum/genética , Raphanus/genética , Raphanus/microbiologia , Transdução de Sinais/genética , Fatores de Virulência/genética , Sequenciamento Completo do Genoma , Xanthomonas campestris/enzimologia
5.
Biotechnol Lett ; 43(9): 1757-1764, 2021 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-34037890

RESUMO

l-Menthyl α-D-glucopyranoside (α-MenG) is a glycoside derivative of l-menthol with improved water-solubility and new flavor property as a food additive. α-MenG can be synthesized through biotransformation, but its scale-up production was rarely reported. In this study, the properties of an α-glucosidase from Xanthomonas campestris pv. campestris 8004 (Agl-2) in catalyzing the glucosylation of menthol was investigated. Agl-2 can almost completely glycosylate l-menthol (> 99%) when using 1.2 M maltose as glycosyl donor. Accumulated glucose resulted from maltose hydrolysis and transglycosylation caused the inhibition of the glucosylation rate (40% reduction of the glucosylation rate in the presence of 1.2 M glucose) which can be avoided through whole-cell catalysis with recombinant E. coli. Interestingly, in spite of the poor solubility of menthol, the productivity of α-MenG reached 24.7 g/(L·h) in a 2 L catalyzing system, indicating industrialization of the reported approach.


Assuntos
Escherichia coli/crescimento & desenvolvimento , Glucosídeos/química , Mentol/química , Xanthomonas campestris/enzimologia , alfa-Glucosidases/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Biocatálise , Biotransformação , Escherichia coli/genética , Glicosilação , Hidrólise , Maltose/química , Engenharia de Proteínas , Xanthomonas campestris/genética , alfa-Glucosidases/genética
6.
J Biol Chem ; 296: 100658, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33857480

RESUMO

Gram-negative bacteria are responsible for a variety of human, animal, and plant diseases. The spread of multidrug-resistant Gram-negative bacteria poses a challenge to disease control and highlights the need for novel antimicrobials. Owing to their critical role in protein synthesis, aminoacyl-tRNA synthetases, including the methionyl-tRNA synthetases MetRS1 and MetRS2, are attractive drug targets. MetRS1 has long been exploited as a drug target in Gram-positive bacteria and protozoan parasites. However, MetRS1 inhibitors have limited action upon Gram-negative pathogens or on Gram-positive bacteria that produce MetRS2 enzymes. The underlying mechanism by which MetRS2 enzymes are insensitive to MetRS1 inhibitors is presently unknown. Herein, we report the first structures of MetRS2 from a multidrug-resistant Gram-negative bacterium in its ligand-free state and bound to its substrate or MetRS1 inhibitors. The structures reveal the binding mode of two diaryldiamine MetRS1 inhibitors that occupy the amino acid-binding site and a surrounding auxiliary pocket implicated in tRNA acceptor arm binding. The structural features associated with amino acid polymorphisms found in the methionine and auxiliary pockets reveal the molecular basis for diaryldiamine binding and selectivity between MetRS1 and MetRS2 enzymes. Moreover, we show that mutations in key polymorphic residues in the methionine and auxiliary pockets not only altered inhibitor binding affinity but also significantly reduced enzyme function. Our findings thus reinforce the tRNA acceptor arm binding site as a druggable pocket in class I aminoacyl-tRNA synthetases and provide a structural basis for optimization of MetRS2 inhibitors for the development of new antimicrobials against Gram-negative pathogens.


Assuntos
Proteínas de Bactérias/metabolismo , Metionina tRNA Ligase/metabolismo , Fenilenodiaminas/farmacologia , RNA de Transferência/metabolismo , Xanthomonas campestris/enzimologia , Sequência de Aminoácidos , Proteínas de Bactérias/antagonistas & inibidores , Sítios de Ligação , Metionina tRNA Ligase/antagonistas & inibidores , Fenilenodiaminas/química , Biossíntese de Proteínas , Homologia de Sequência , Especificidade por Substrato
7.
Acta Crystallogr F Struct Biol Commun ; 76(Pt 10): 488-494, 2020 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-33006577

RESUMO

LonA peptidase is a major component of the protein quality-control mechanism in both prokaryotes and the organelles of eukaryotes. Proteins homologous to the N-terminal domain of LonA peptidase, but lacking its other domains, are conserved in several phyla of prokaryotes, including the Xanthomonadales order. However, the function of these homologous proteins (LonNTD-like proteins) is not known. Here, the crystal structure of the LonNTD-like protein from Xanthomonas campestris (XCC3289; UniProt Q8P5P7) is reported at 2.8 Šresolution. The structure was solved by molecular replacement and contains one polypeptide in the asymmetric unit. The structure was refined to an Rfree of 29%. The structure of XCC3289 consists of two domains joined by a long loop. The N-terminal domain (residues 1-112) consists of an α-helix surrounded by ß-sheets, whereas the C-terminal domain (residues 123-193) is an α-helical bundle. The fold and spatial orientation of the two domains closely resembles those of the N-terminal domains of the LonA peptidases from Escherichia coli and Mycobacterium avium. The structure is also similar to that of cereblon, a substrate-recognizing component of the E3 ubiquitin ligase complex. The N-terminal domains of both LonA and cereblon are known to be involved in specific protein-protein interactions. This structural analysis suggests that XCC3289 and other LonNTD-like proteins might also be capable of such protein-protein interactions.


Assuntos
Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Cristalografia por Raios X/métodos , Protease La/química , Protease La/metabolismo , Xanthomonas campestris/enzimologia , Domínio Catalítico , Ligação Proteica , Conformação Proteica , Domínios Proteicos , Especificidade por Substrato
8.
Acta Crystallogr D Struct Biol ; 76(Pt 7): 687-697, 2020 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-32627741

RESUMO

Flavin-dependent halogenases regioselectively introduce halide substituents into electron-rich substrates under mild reaction conditions. For the enzyme Xcc4156 from Xanthomonas campestris, the structure of a complex with the cofactor flavin adenine dinucleotide (FAD) and a bromide ion would be of particular interest as this enzyme exclusively brominates model substrates in vitro. Apo Xcc4156 crystals diffracted to 1.6 Šresolution. The structure revealed an open substrate-binding site lacking the loop regions that close off the active site and contribute to substrate binding in tryptophan halogenases. Therefore, Xcc4156 might accept larger substrates, possibly even peptides. Soaking of apo Xcc4156 crystals with FAD led to crumbling of the intergrown crystals. Around half of the crystals soaked with FAD did not diffract, while in the others there was no electron density for FAD. The FAD-binding loop, which changes its conformation between the apo and the FAD-bound form in related enzymes, is involved in a crystal contact in the apo Xcc4156 crystals. The conformational change that is predicted to occur upon FAD binding would disrupt this crystal contact, providing a likely explanation for the destruction of the apo crystals in the presence of FAD. Soaking with only bromide did not result in bromide bound to the catalytic halide-binding site. Simultaneous soaking with FAD and bromide damaged the crystals more severely than soaking with only FAD. Together, these latter two observations suggest that FAD and bromide bind to Xcc4156 with positive cooperativity. Thus, apo Xcc4156 crystals provide functional insight into FAD and bromide binding, even though neither the cofactor nor the halide is visible in the structure.


Assuntos
Proteínas de Bactérias/química , Brometos/química , Flavina-Adenina Dinucleotídeo/química , Halogenação , Modelos Moleculares , Xanthomonas campestris/enzimologia , Sítios de Ligação , Domínio Catalítico , Ligação Proteica
9.
J Mol Model ; 26(7): 178, 2020 Jun 19.
Artigo em Inglês | MEDLINE | ID: mdl-32562031

RESUMO

The linker of the endoglucanase from Xanthomonas campestris pv. campestris ((PT)12) has a specific sequence, a repeating proline-threonine motif. In order to understand its role, it has been compared to a regular sequence linker, in this work-the cellobiohydrolase 2 from Trichoderma reesei (CBH2). Elastic properties of the two linkers have been estimated by calculating free energy profile along the linker length from an enhanced sampling molecular dynamics simulation. The (PT)12 exhibits more pronounced elastic behaviour than CBH2. The PT repeating motif results in a two-mode energy profile which could be very useful in the enzyme motions along the substrate during hydrolytic catalysis.


Assuntos
Motivos de Aminoácidos , Proteínas de Bactérias/metabolismo , Celulase/metabolismo , Celulose 1,4-beta-Celobiosidase/metabolismo , Proteínas Fúngicas/metabolismo , Hypocreales/enzimologia , Simulação de Dinâmica Molecular , Sequências Repetitivas de Aminoácidos , Xanthomonas campestris/enzimologia , Proteínas de Bactérias/química , Catálise , Celulase/química , Celulose 1,4-beta-Celobiosidase/química , Proteínas Fúngicas/química , Hidrólise , Prolina , Conformação Proteica , Espalhamento a Baixo Ângulo , Treonina , Difração de Raios X
10.
Mol Plant Pathol ; 21(7): 907-922, 2020 07.
Artigo em Inglês | MEDLINE | ID: mdl-32281725

RESUMO

Homologous regulatory factors are widely present in bacteria, but whether homologous regulators synergistically or differentially regulate different biological functions remains mostly unknown. Here, we report that the homologous regulators RpoN1 and RpoN2 of the plant pathogen Xanthomonas campestris pv. campestris (Xcc) play different regulatory roles with respect to virulence traits, flagellar biosynthesis, and basal metabolism. RpoN2 directly regulated Xcc fliC and fliQ to modulate flagellar synthesis in X. campestris, thus affecting the swimming motility of X. campestris. Mutation of rpoN2 resulted in reduced production of biofilms and extracellular polysaccharides in Xcc. These defects may together cause reduced virulence of the rpoN2 mutant against the host plant. Moreover, we demonstrated that RpoN1 could regulate branched-chain fatty acid production and modulate the synthesis of diffusible signal factor family quorum sensing signals. Although RpoN1 and RpoN2 are homologues, the regulatory roles and biological functions of these proteins were not interchangeable. Overall, our report provides new insights into the two different molecular roles that form the basis for the transcriptional specialization of RpoN homologues.


Assuntos
Flagelos/metabolismo , RNA Polimerase Sigma 54/fisiologia , Xanthomonas campestris/patogenicidade , Biofilmes , Ácidos Graxos/biossíntese , Deleção de Genes , Plantas/microbiologia , RNA Polimerase Sigma 54/genética , Transdução de Sinais , Virulência , Xanthomonas campestris/enzimologia , Xanthomonas campestris/genética , Xanthomonas campestris/metabolismo
11.
Biochem Biophys Res Commun ; 526(3): 580-585, 2020 06 04.
Artigo em Inglês | MEDLINE | ID: mdl-32247611

RESUMO

The α-glucosyl transfer enzyme XgtA is a novel type α-Glucosidase (EC 3.2.1.20) produced by Xanthomonas campestris WU-9701. One of the unique properties of XgtA is that it shows extremely high α-glucosylation activity toward alcoholic and phenolic -OH groups in compounds using maltose as an α-glucosyl donor and allows for the synthesis of various useful α-glucosides with high yields. XgtA shows no hydrolytic activity toward sucrose and no α-glucosylation activity toward saccharides to produce oligosaccharides. In this report, the crystal structure of XgtA was solved at 1.72 Å resolution. The crystal belonged to space group P22121, with unit-cell parameters a = 73.07, b = 83.48, and c = 180.79 Å. The ß→α loop 4 of XgtA, which is proximal to the catalytic center, formed a unique structure that is not observed in XgtA homologs. Furthermore, XgtA was found to contain unique amino acid residues around its catalytic center. The unique structure of XgtA provides an insight into the mechanism for the regulation of substrate specificity in this enzyme.


Assuntos
Xanthomonas campestris/enzimologia , alfa-Glucosidases/química , Domínio Catalítico , Cristalografia por Raios X , Hidrólise , Modelos Moleculares , Conformação Proteica , Especificidade por Substrato , Xanthomonas campestris/química
12.
mBio ; 11(2)2020 03 10.
Artigo em Inglês | MEDLINE | ID: mdl-32156808

RESUMO

OleA, a member of the thiolase superfamily, is known to catalyze the Claisen condensation of long-chain acyl coenzyme A (acyl-CoA) substrates, initiating metabolic pathways in bacteria for the production of membrane lipids and ß-lactone natural products. OleA homologs are found in diverse bacterial phyla, but to date, only one homodimeric OleA has been successfully purified to homogeneity and characterized in vitro A major impediment for the identification of new OleA enzymes has been protein instability and time-consuming in vitro assays. Here, we developed a bioinformatic pipeline to identify OleA homologs and a new rapid assay to screen OleA enzyme activity in vivo and map their taxonomic diversity. The screen is based on the discovery that OleA displayed surprisingly high rates of p-nitrophenyl ester hydrolysis, an activity not shared by other thiolases, including FabH. The high rates allowed activity to be determined in vitro and with heterologously expressed OleA in vivo via the release of the yellow p-nitrophenol product. Seventy-four putative oleA genes identified in the genomes of diverse bacteria were heterologously expressed in Escherichia coli, and 25 showed activity with p-nitrophenyl esters. The OleA proteins tested were encoded in variable genomic contexts from seven different phyla and are predicted to function in distinct membrane lipid and ß-lactone natural product metabolic pathways. This study highlights the diversity of unstudied OleA proteins and presents a rapid method for their identification and characterization.IMPORTANCE Microbially produced ß-lactones are found in antibiotic, antitumor, and antiobesity drugs. Long-chain olefinic membrane hydrocarbons have potential utility as fuels and specialty chemicals. The metabolic pathway to both end products share bacterial enzymes denoted as OleA, OleC, and OleD that transform acyl-CoA cellular intermediates into ß-lactones. Bacteria producing membrane hydrocarbons via the Ole pathway additionally express a ß-lactone decarboxylase, OleB. Both ß-lactone and olefin biosynthesis pathways are initiated by OleA enzymes that define the overall structure of the final product. There is currently very limited information on OleA enzymes apart from the single representative from Xanthomonas campestris In this study, bioinformatic analysis identified hundreds of new, putative OleA proteins, 74 proteins were screened via a rapid whole-cell method, leading to the identification of 25 stably expressed OleA proteins representing seven bacteria phyla.


Assuntos
Bactérias/enzimologia , Proteínas de Bactérias/metabolismo , Vias Biossintéticas , Hidrocarbonetos/metabolismo , Lactonas/metabolismo , Bactérias/classificação , Proteínas de Bactérias/genética , Catálise , Biologia Computacional , Escherichia coli/genética , Genoma Bacteriano , Xanthomonas campestris/enzimologia
13.
Arch Microbiol ; 202(3): 597-607, 2020 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-31741013

RESUMO

Xanthomonas campestris pv. campestris is a bacterial pathogen and the causal agent of black rot in crucifers. In this study, a clpX mutant was obtained by EZ-Tn5 transposon mutagenesis of the X. campestris pv. campestris. The clpX gene was annotated to encode ClpX, the ATP-binding subunit of ATP-dependent Clp protease. The clpX mutant exhibited reduced bacterial attachment, extracellular enzyme production and virulence. Mutation of clpX also resulted in increased sensitivity to a myriad of stresses, including heat, puromycin, and sodium dodecyl sulfate. These altered phenotypes of the clpX mutant could be restored to wild-type levels by in trans expression of the intact clpX gene. Proteomic analysis revealed that the expression of 211 proteins differed not less than twofold between the wild-type and mutant strains. Cluster of orthologous group analysis revealed that these proteins are mainly involved in metabolism, cell wall biogenesis, chaperone, and signal transduction. The reverse transcription quantitative real-time polymerase chain reaction analysis demonstrated that the expression of genes encoding attachment-related proteins, extracellular enzymes, and virulence-associated proteins was reduced after clpX mutation. The results in this study contribute to the functional understanding of the role of clpX in Xanthomonas for the first time, and extend new insights into the function of clpX in bacteria.


Assuntos
Aderência Bacteriana , Proteínas de Bactérias/metabolismo , Endopeptidase Clp/metabolismo , Xanthomonas campestris/enzimologia , Xanthomonas campestris/patogenicidade , Proteínas de Bactérias/genética , Endopeptidase Clp/genética , Regulação Bacteriana da Expressão Gênica , Mutação , Doenças das Plantas/microbiologia , Proteômica , Virulência , Xanthomonas campestris/genética , Xanthomonas campestris/fisiologia
14.
Mol Plant Pathol ; 20(12): 1696-1709, 2019 12.
Artigo em Inglês | MEDLINE | ID: mdl-31560825

RESUMO

Xanthomonas campestris pv. campestris (Xcc), the causal agent of black rot in crucifers, produces a membrane-bound yellow pigment called xanthomonadin to protect against photobiological and peroxidative damage, and uses a quorum-sensing mechanism mediated by the diffusible signal factor (DSF) family signals to regulate virulence factors production. The Xcc gene XCC4003, annotated as Xcc fabG3, is located in the pig cluster, which may be responsible for xanthomonadin synthesis. We report that fabG3 expression restored the growth of the Escherichia coli fabG temperature-sensitive mutant CL104 under non-permissive conditions. In vitro assays demonstrated that FabG3 catalyses the reduction of 3-oxoacyl-acyl carrier protein (ACP) intermediates in fatty acid synthetic reactions, although FabG3 had a lower activity than FabG1. Moreover, the fabG3 deletion did not affect growth or fatty acid composition. These results indicate that Xcc fabG3 encodes a 3-oxoacyl-ACP reductase, but is not essential for growth or fatty acid synthesis. However, the Xcc fabG3 knock-out mutant abolished xanthomonadin production, which could be only restored by wild-type fabG3, but not by other 3-oxoacyl-ACP reductase-encoding genes, indicating that Xcc FabG3 is specifically involved in xanthomonadin biosynthesis. Additionally, our study also shows that the Xcc fabG3-disrupted mutant affects Xcc virulence in host plants.


Assuntos
3-Oxoacil-(Proteína Carreadora de Acil) Redutase/metabolismo , Pigmentos Biológicos/biossíntese , Xanthomonas campestris/metabolismo , 3-Oxoacil-(Proteína Carreadora de Acil) Redutase/genética , Ácidos Graxos/biossíntese , Técnicas de Inativação de Genes , Teste de Complementação Genética , Pigmentos Biológicos/genética , Percepção de Quorum , Virulência/genética , Xanthomonas campestris/enzimologia , Xanthomonas campestris/genética , Xanthomonas campestris/patogenicidade
15.
Environ Microbiol ; 21(12): 4504-4520, 2019 12.
Artigo em Inglês | MEDLINE | ID: mdl-31301270

RESUMO

The HprK serine kinase is a component of the phosphoenolpyruvate phosphotransferase system (PTS) of bacteria that generally regulates catabolite repression through phosphorylation/dephosphorylation of the PTS protein PtsH at a conserved serine residue. However, many bacteria do not encode a complete PTS or even have an HprK homologue. Xanthomonas campestris pv. campestris (Xcc) is a pathogen that cause black rot disease in crucifer plants and one of the few Gram-negative bacteria that encodes a homologue of HprK protein (herein HprKXcc ). To gain insight into the role of HprKXcc and other PTS-related components in Xcc we individually mutated and phenotypically assessed the resulting strains. Deletion of hprK Xcc demonstrated its requirement for virulence and other diverse cellular processes associated including extracellular enzyme activity, extracellular-polysaccharide production and cell motility. Global transcriptome analyses revealed the HprKXcc had a broad regulatory role in Xcc. Additionally, through overexpression, double gene deletion and transcriptome analysis we demonstrated that hprK Xcc shares an epistatic relationship with ptsH. Furthermore, we demonstrate that HprKXcc is a functional serine kinase, which has the ability to phosphorylate PtsH. Taken together, the data illustrates the previously unappreciated global regulatory role of HprKXcc and previously uncharacterized PTS components that control virulence in this pathogen.


Assuntos
Proteínas de Bactérias/metabolismo , Proteínas Serina-Treonina Quinases/metabolismo , Xanthomonas campestris/enzimologia , Xanthomonas campestris/patogenicidade , Proteínas Serina-Treonina Quinases/genética , Virulência/genética
16.
Int J Biol Macromol ; 136: 493-502, 2019 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-31216447

RESUMO

Cellulases are essential enzymatic components for the transformation of plant biomass into fuels, renewable materials and green chemicals. Here, we determined the crystal structure, pattern of hydrolysis products release, and conducted molecular dynamics simulations of the major endoglucanase from the Xanthomonas campestris pv. campestris (XccCel5A). XccCel5A has a TIM barrel fold with the catalytic site centrally placed in a binding groove surrounded by aromatic side chains. Molecular dynamics simulations show that productive position of the substrate is secured by a network of hydrogen bonds in the four main subsites, which differ in details from homologous structures. Capillary zone electrophoresis and computational studies reveal XccCel5A can act both as endoglucanase and licheninase, but there are preferable arrangements of substrate regarding ß-1,3 and ß-1,4 bonds within the binding cleft which are related to the enzymatic efficiency.


Assuntos
Celulase/química , Celulase/metabolismo , Simulação de Dinâmica Molecular , Oligossacarídeos/metabolismo , Xanthomonas campestris/enzimologia , Domínio Catalítico , Cristalografia por Raios X , Hidrólise
17.
Philos Trans R Soc Lond B Biol Sci ; 374(1767): 20180311, 2019 03 04.
Artigo em Inglês | MEDLINE | ID: mdl-30967026

RESUMO

It has long been known that phytopathogenic bacteria react to plant-specific stimuli or environmental factors. However, how bacterial cells sense these environmental cues remains incompletely studied. Recently, three kinds of histidine kinases (HKs) were identified as receptors to perceive plant-associated or quorum-sensing signals. Among these kinases, HK VgrS detects iron depletion by binding to ferric iron via an ExxE motif, RpfC binds diffusible signal factor (DSF) by its N-terminal peptide and activates its autokinase activity through relaxation of autoinhibition, and PcrK specifically senses plant hormone-cytokinin and elicits bacterial responses to oxidative stress. These HKs are critical sensors that regulate the virulence of a Gram-negative bacterium, Xanthomonas campestris pv. campestris. Research progress on the signal perception of phytopathogenic bacterial HKs suggests that inter-kingdom signalling between host plants and pathogens controls pathogenesis and can be used as a potential molecular target to protect plants from bacterial diseases. This article is part of the theme issue 'Biotic signalling sheds light on smart pest management'.


Assuntos
Proteínas de Bactérias/genética , Histidina Quinase/genética , Xanthomonas campestris/fisiologia , Xanthomonas campestris/patogenicidade , Proteínas de Bactérias/metabolismo , Comunicação Celular/fisiologia , Regulação Bacteriana da Expressão Gênica , Histidina Quinase/metabolismo , Transdução de Sinais/fisiologia , Virulência/genética , Xanthomonas campestris/enzimologia , Xanthomonas campestris/genética
18.
FEMS Microbiol Lett ; 366(7)2019 04 01.
Artigo em Inglês | MEDLINE | ID: mdl-30977795

RESUMO

The lytic transglycosylases (LTs) are important enzymes that degrade peptidoglycan of the bacterial cell wall and affect many biological functions. We present here that XC_0706 and XC_3001 are annotated as the LTs in Xanthomonas campestris pv. campestris. XC_0706 is associated with virulence and plays a pivotal role in cell division. Mutation on XC_3001 reduced hypersensitive response induction and the translocation of type III effector, but did not affect the function of the type II secretion system. Further studies showed that multiple LTs genes contribute to efficiency of the type III secretory system in X. campestris pv. campestris.


Assuntos
Proteínas de Bactérias/metabolismo , Glicosiltransferases/metabolismo , Sistemas de Secreção Tipo III/metabolismo , Xanthomonas campestris/enzimologia , Proteínas de Bactérias/genética , Capsicum/microbiologia , Regulação Bacteriana da Expressão Gênica , Glicosiltransferases/genética , Doenças das Plantas/microbiologia , Sistemas de Secreção Tipo III/genética , Virulência , Xanthomonas campestris/genética , Xanthomonas campestris/fisiologia
19.
Science ; 364(6435)2019 04 05.
Artigo em Inglês | MEDLINE | ID: mdl-30948526

RESUMO

Pathogen recognition by nucleotide-binding (NB), leucine-rich repeat (LRR) receptors (NLRs) plays roles in plant immunity. The Xanthomonas campestris pv. campestris effector AvrAC uridylylates the Arabidopsis PBL2 kinase, and the latter (PBL2UMP) acts as a ligand to activate the NLR ZAR1 precomplexed with the RKS1 pseudokinase. Here we report the cryo-electron microscopy structures of ZAR1-RKS1 and ZAR1-RKS1-PBL2UMP in an inactive and intermediate state, respectively. The ZAR1LRR domain, compared with animal NLRLRR domains, is differently positioned to sequester ZAR1 in an inactive state. Recognition of PBL2UMP is exclusively through RKS1, which interacts with ZAR1LRR PBL2UMP binding stabilizes the RKS1 activation segment, which sterically blocks ZAR1 adenosine diphosphate (ADP) binding. This engenders a more flexible NB domain without conformational changes in the other ZAR1 domains. Our study provides a structural template for understanding plant NLRs.


Assuntos
Difosfato de Adenosina/química , Proteínas de Arabidopsis/química , Arabidopsis/enzimologia , Arabidopsis/microbiologia , Proteínas de Transporte/química , Peptídeos e Proteínas de Sinalização Intracelular/química , Proteínas NLR/química , Fosfoproteínas/química , Proteínas Serina-Treonina Quinases/química , Difosfato de Adenosina/metabolismo , Proteínas de Arabidopsis/metabolismo , Proteínas de Bactérias/metabolismo , Microscopia Crioeletrônica , Ligantes , Proteínas de Membrana , Núcleosídeo-Fosfato Quinase/metabolismo , Domínios Proteicos , Proteínas Serina-Treonina Quinases/metabolismo , Xanthomonas campestris/enzimologia
20.
Science ; 364(6435)2019 04 05.
Artigo em Inglês | MEDLINE | ID: mdl-30948527

RESUMO

Nucleotide-binding, leucine-rich repeat receptors (NLRs) perceive pathogen effectors to trigger plant immunity. Biochemical mechanisms underlying plant NLR activation have until now remained poorly understood. We reconstituted an active complex containing the Arabidopsis coiled-coil NLR ZAR1, the pseudokinase RKS1, uridylated protein kinase PBL2, and 2'-deoxyadenosine 5'-triphosphate (dATP), demonstrating the oligomerization of the complex during immune activation. The cryo-electron microscopy structure reveals a wheel-like pentameric ZAR1 resistosome. Besides the nucleotide-binding domain, the coiled-coil domain of ZAR1 also contributes to resistosome pentamerization by forming an α-helical barrel that interacts with the leucine-rich repeat and winged-helix domains. Structural remodeling and fold switching during activation release the very N-terminal amphipathic α helix of ZAR1 to form a funnel-shaped structure that is required for the plasma membrane association, cell death triggering, and disease resistance, offering clues to the biochemical function of a plant resistosome.


Assuntos
Difosfato de Adenosina/química , Proteínas de Arabidopsis/química , Arabidopsis/imunologia , Arabidopsis/microbiologia , Proteínas de Transporte/química , Resistência à Doença , Interações Hospedeiro-Patógeno/imunologia , Peptídeos e Proteínas de Sinalização Intracelular/química , Proteínas NLR/química , Fosfoproteínas/química , Proteínas Serina-Treonina Quinases/química , Arabidopsis/enzimologia , Proteínas de Arabidopsis/metabolismo , Proteínas de Bactérias/metabolismo , Microscopia Crioeletrônica , Ligantes , Proteínas de Membrana , Núcleosídeo-Fosfato Quinase/metabolismo , Domínios Proteicos , Proteínas Serina-Treonina Quinases/metabolismo , Estrutura Secundária de Proteína , Xanthomonas campestris/enzimologia
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